#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19786/NA19786.cram --algo AlignmentStat 1000G/NA19786/QCmetrics/NA19786.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	365028430	365028430	1.000000	0	364967839	0.999834	54231875138	342372905	51085682928	50502497029	0.000000	0.003528	0.002817	0.000253	150.000000	364062999	0.997521	0	0.500628	0.007284	0.000000	
SECOND_OF_PAIR	365028430	365028430	1.000000	0	364100904	0.997459	53826420580	339015012	50519739017	49656635112	0.000000	0.004292	0.003481	0.000257	150.000000	364062999	0.999896	0	0.501171	0.007447	0.000000	
PAIR	730056860	730056860	1.000000	0	729068743	0.998647	108058295718	681387917	101605421945	100159132141	0.000000	0.003908	0.003147	0.000255	150.000000	728125998	0.998707	0	0.500899	0.007365	0.000000