#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19795/NA19795.cram --algo AlignmentStat 1000G/NA19795/QCmetrics/NA19795.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367927485	367927485	1.000000	0	367868993	0.999841	54679475754	346410712	51693654044	51098370097	0.000000	0.003380	0.002712	0.000241	150.000000	367076829	0.997847	0	0.500425	0.006476	0.000000	
SECOND_OF_PAIR	367927485	367927485	1.000000	0	367115813	0.997794	54317592186	343354971	51179228741	50359448872	0.000000	0.004022	0.003261	0.000245	150.000000	367076829	0.999894	0	0.501096	0.006634	0.000000	
PAIR	735854970	735854970	1.000000	0	734984806	0.998817	108997067940	689765683	102872882785	101457818969	0.000000	0.003700	0.002985	0.000243	150.000000	734153658	0.998869	0	0.500760	0.006555	0.000000