#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19909/NA19909.cram --algo AlignmentStat 1000G/NA19909/QCmetrics/NA19909.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	364922243	364922243	1.000000	0	364830799	0.999749	54179698628	344171242	51293278452	50455784596	0.000000	0.004258	0.003695	0.000257	150.000000	363911618	0.997481	0	0.500623	0.007020	0.000000	
SECOND_OF_PAIR	364922243	364922243	1.000000	0	363972834	0.997398	53876561091	341170188	50845426424	49936571129	0.000000	0.004583	0.003933	0.000263	150.000000	363911618	0.999832	0	0.501058	0.007072	0.000000	
PAIR	729844486	729844486	1.000000	0	728803633	0.998574	108056259719	685341430	102138704876	100392355725	0.000000	0.004420	0.003813	0.000260	150.000000	727823236	0.998655	0	0.500840	0.007046	0.000000