#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA19982/NA19982.cram --algo AlignmentStat 1000G/NA19982/QCmetrics/NA19982.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	360713129	360713129	1.000000	0	360615120	0.999728	53545164735	338806664	50521826103	49654994061	0.000000	0.004423	0.003735	0.000250	150.000000	359559382	0.997072	0	0.500531	0.006687	0.000001	
SECOND_OF_PAIR	360713129	360713129	1.000000	0	359612437	0.996949	53109568262	335585893	49946885006	48803240178	0.000000	0.005415	0.004618	0.000254	150.000000	359559382	0.999852	0	0.501223	0.006903	0.000000	
PAIR	721426258	721426258	1.000000	0	720227557	0.998338	106654732997	674392557	100468711109	98458234239	0.000000	0.004917	0.004174	0.000252	150.000000	719118764	0.998460	0	0.500877	0.006795	0.000000