#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20127/NA20127.cram --algo AlignmentStat 1000G/NA20127/QCmetrics/NA20127.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	467223674	467223674	1.000000	0	467081917	0.999697	69411239938	441547771	65860027115	64951402470	0.000000	0.003805	0.003226	0.000257	150.000000	465947913	0.997572	0	0.500570	0.007137	0.000000	
SECOND_OF_PAIR	467223674	467223674	1.000000	0	466021064	0.997426	68747794208	437474873	65012640181	63608428206	0.000000	0.005128	0.004460	0.000267	150.000000	465947913	0.999843	0	0.501137	0.007876	0.000000	
PAIR	934447348	934447348	1.000000	0	933102981	0.998561	138159034146	879022644	130872667296	128559830676	0.000000	0.004463	0.003839	0.000262	150.000000	931895826	0.998706	0	0.500853	0.007506	0.000000