#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20276/NA20276.cram --algo AlignmentStat 1000G/NA20276/QCmetrics/NA20276.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	352917600	352917600	1.000000	0	352811728	0.999700	52419449282	332769319	49630723703	48712555187	0.000000	0.004304	0.003740	0.000241	150.000000	351917803	0.997466	0	0.500664	0.005362	0.000000	
SECOND_OF_PAIR	352917600	352917600	1.000000	0	351973244	0.997324	52039964858	329655346	49107443770	48102413532	0.000000	0.004673	0.004006	0.000247	150.000000	351917803	0.999842	0	0.500940	0.005467	0.000000	
PAIR	705835200	705835200	1.000000	0	704784972	0.998512	104459414140	662424665	98738167473	96814968719	0.000000	0.004488	0.003872	0.000244	150.000000	703835606	0.998653	0	0.500802	0.005414	0.000000