#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20342/NA20342.cram --algo AlignmentStat 1000G/NA20342/QCmetrics/NA20342.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376218747	376218747	1.000000	0	376128930	0.999761	55827334672	352214634	52508764019	51740056127	0.000000	0.004032	0.003308	0.000260	150.000000	375265438	0.997704	0	0.500508	0.008014	0.000000	
SECOND_OF_PAIR	376218747	376218747	1.000000	0	375327177	0.997630	55475058490	348932025	51991659465	51144449637	0.000000	0.004303	0.003483	0.000268	150.000000	375265438	0.999836	0	0.501091	0.008259	0.000000	
PAIR	752437494	752437494	1.000000	0	751456107	0.998696	111302393162	701146659	104500423484	102884505764	0.000000	0.004167	0.003395	0.000264	150.000000	750530876	0.998769	0	0.500799	0.008136	0.000000