#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20355/NA20355.cram --algo AlignmentStat 1000G/NA20355/QCmetrics/NA20355.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369882527	369882527	1.000000	0	369713636	0.999543	54888176928	348934092	51992697607	50687562797	0.000000	0.005359	0.004771	0.000245	150.000000	368603425	0.996997	0	0.500622	0.006243	0.000000	
SECOND_OF_PAIR	369882527	369882527	1.000000	0	368678012	0.996744	54513993183	346136059	51511131697	49807442235	0.000000	0.006482	0.005814	0.000249	150.000000	368603425	0.999798	0	0.500880	0.006365	0.000000	
PAIR	739765054	739765054	1.000000	0	738391648	0.998143	109402170111	695070151	103503829304	100495005032	0.000000	0.005919	0.005290	0.000247	150.000000	737206850	0.998395	0	0.500751	0.006304	0.000000