#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20356/NA20356.cram --algo AlignmentStat 1000G/NA20356/QCmetrics/NA20356.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	374391254	374391254	1.000000	0	374272024	0.999682	55553756967	351786391	52425546975	51557008198	0.000000	0.004258	0.003601	0.000258	150.000000	373365812	0.997579	0	0.500510	0.007400	0.000000	
SECOND_OF_PAIR	374391254	374391254	1.000000	0	373433168	0.997441	55253455529	348692267	51969651715	51070097052	0.000000	0.004488	0.003739	0.000265	150.000000	373365812	0.999820	0	0.501152	0.007539	0.000000	
PAIR	748782508	748782508	1.000000	0	747705192	0.998561	110807212496	700478658	104395198690	102627105250	0.000000	0.004373	0.003670	0.000261	150.000000	746731624	0.998698	0	0.500830	0.007469	0.000000