#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20502/NA20502.cram --algo AlignmentStat 1000G/NA20502/QCmetrics/NA20502.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385415747	385415747	1.000000	0	385302172	0.999705	57258731346	364842166	54419484352	53469890904	0.000000	0.004037	0.003485	0.000219	150.000000	384276830	0.997339	0	0.500584	0.006348	0.000000	
SECOND_OF_PAIR	385415747	385415747	1.000000	0	384334574	0.997195	56824825551	361314708	53817570123	52693370396	0.000000	0.004633	0.003974	0.000225	150.000000	384276830	0.999850	0	0.501254	0.006542	0.000000	
PAIR	770831494	770831494	1.000000	0	769636746	0.998450	114083556897	726156874	108237054475	106163261300	0.000000	0.004334	0.003728	0.000222	150.000000	768553660	0.998593	0	0.500919	0.006445	0.000000