#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20512/NA20512.cram --algo AlignmentStat 1000G/NA20512/QCmetrics/NA20512.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371273528	371273528	1.000000	0	371194662	0.999788	55123016858	349346807	52103652170	51306998368	0.000000	0.003806	0.003137	0.000233	150.000000	370332117	0.997676	0	0.500549	0.006869	0.000000	
SECOND_OF_PAIR	371273528	371273528	1.000000	0	370377232	0.997586	54759598648	346289476	51598565490	50698635600	0.000000	0.004204	0.003441	0.000238	150.000000	370332117	0.999878	0	0.500924	0.007097	0.000000	
PAIR	742547056	742547056	1.000000	0	741571894	0.998687	109882615506	695636283	103702217660	102005633968	0.000000	0.004005	0.003289	0.000236	150.000000	740664234	0.998776	0	0.500736	0.006983	0.000000