#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20517/NA20517.cram --algo AlignmentStat 1000G/NA20517/QCmetrics/NA20517.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	362232772	362232772	1.000000	0	362160981	0.999802	53809772697	340787479	50836222075	50040239690	0.000000	0.003731	0.003132	0.000229	150.000000	361359531	0.997787	0	0.500577	0.006713	0.000000	
SECOND_OF_PAIR	362232772	362232772	1.000000	0	361401716	0.997706	53483033544	338065049	50386496408	49513673015	0.000000	0.004067	0.003383	0.000233	150.000000	361359531	0.999883	0	0.500831	0.006935	0.000000	
PAIR	724465544	724465544	1.000000	0	723562697	0.998754	107292806241	678852528	101222718483	99553912705	0.000000	0.003898	0.003257	0.000231	150.000000	722719062	0.998834	0	0.500704	0.006824	0.000000