#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20524/NA20524.cram --algo AlignmentStat 1000G/NA20524/QCmetrics/NA20524.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	392190169	392190169	1.000000	0	392099127	0.999768	58215793105	368511073	54959655518	54113694792	0.000000	0.003852	0.003147	0.000234	150.000000	391289647	0.997936	0	0.500450	0.006437	0.000000	
SECOND_OF_PAIR	392190169	392190169	1.000000	0	391337798	0.997827	57887420108	366032950	54531800458	53509743962	0.000000	0.004383	0.003604	0.000237	150.000000	391289647	0.999877	0	0.500716	0.006622	0.000000	
PAIR	784380338	784380338	1.000000	0	783436925	0.998797	116103213213	734544023	109491455976	107623438754	0.000000	0.004117	0.003375	0.000236	150.000000	782579294	0.998905	0	0.500583	0.006529	0.000000