#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20525/NA20525.cram --algo AlignmentStat 1000G/NA20525/QCmetrics/NA20525.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	365404631	365404631	1.000000	0	365250436	0.999578	54205499306	342728584	51063537975	49747082815	0.000000	0.005404	0.004738	0.000225	150.000000	364063432	0.996750	0	0.500696	0.006420	0.000001	
SECOND_OF_PAIR	365404631	365404631	1.000000	0	364139353	0.996537	53792706131	339519261	50526353861	48954887140	0.000000	0.006182	0.005428	0.000231	150.000000	364063432	0.999792	0	0.500945	0.006548	0.000000	
PAIR	730809262	730809262	1.000000	0	729389789	0.998058	107998205437	682247845	101589891836	98701969955	0.000000	0.005791	0.005081	0.000228	150.000000	728126864	0.998269	0	0.500820	0.006484	0.000001