#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20529/NA20529.cram --algo AlignmentStat 1000G/NA20529/QCmetrics/NA20529.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	347046781	347046781	1.000000	0	346893667	0.999559	51523652246	328100842	48883771070	47499909056	0.000000	0.005403	0.004896	0.000210	150.000000	345912474	0.997171	0	0.500606	0.005366	0.000000	
SECOND_OF_PAIR	347046781	347046781	1.000000	0	345989331	0.996953	51212120559	325368572	48456085038	47003803666	0.000000	0.005684	0.005096	0.000216	150.000000	345912474	0.999778	0	0.500752	0.005452	0.000000	
PAIR	694093562	694093562	1.000000	0	692882998	0.998256	102735772805	653469414	97339856108	94503712722	0.000000	0.005543	0.004996	0.000213	150.000000	691824948	0.998473	0	0.500679	0.005409	0.000000