#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20530/NA20530.cram --algo AlignmentStat 1000G/NA20530/QCmetrics/NA20530.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	384157896	384157896	1.000000	0	384079457	0.999796	57086279980	363332851	54200058484	53351227117	0.000000	0.003696	0.003146	0.000227	150.000000	383297180	0.997963	0	0.500545	0.006900	0.000000	
SECOND_OF_PAIR	384157896	384157896	1.000000	0	383341527	0.997875	56774852081	360806004	53773603410	52782628437	0.000000	0.004168	0.003540	0.000230	150.000000	383297180	0.999884	0	0.500745	0.007137	0.000000	
PAIR	768315792	768315792	1.000000	0	767420984	0.998835	113861132061	724138855	107973661894	106133855554	0.000000	0.003931	0.003342	0.000229	150.000000	766594360	0.998923	0	0.500645	0.007018	0.000000