#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20536/NA20536.cram --algo AlignmentStat 1000G/NA20536/QCmetrics/NA20536.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	344060809	344060809	1.000000	0	343912490	0.999569	51069964570	323085507	48139498794	46822882534	0.000000	0.005476	0.004865	0.000216	150.000000	342755805	0.996637	0	0.500684	0.005867	0.000000	
SECOND_OF_PAIR	344060809	344060809	1.000000	0	342824888	0.996408	50689110720	320264610	47656429756	46006280913	0.000000	0.006600	0.005909	0.000221	150.000000	342755805	0.999798	0	0.500735	0.005938	0.000000	
PAIR	688121618	688121618	1.000000	0	686737378	0.997988	101759075290	643350117	95795928550	92829163447	0.000000	0.006036	0.005384	0.000219	150.000000	685511610	0.998215	0	0.500710	0.005902	0.000000