#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20544/NA20544.cram --algo AlignmentStat 1000G/NA20544/QCmetrics/NA20544.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378776675	378776675	1.000000	0	378641167	0.999642	56224915550	355731146	53011791968	51683605398	0.000000	0.005315	0.004655	0.000219	150.000000	377536590	0.997083	0	0.500666	0.006088	0.000000	
SECOND_OF_PAIR	378776675	378776675	1.000000	0	377606255	0.996910	55844927360	352738806	52511930344	50916497365	0.000000	0.006058	0.005319	0.000224	150.000000	377536590	0.999816	0	0.500675	0.006158	0.000000	
PAIR	757553350	757553350	1.000000	0	756247422	0.998276	112069842910	708469952	105523722312	102600102763	0.000000	0.005685	0.004986	0.000221	150.000000	755073180	0.998447	0	0.500670	0.006123	0.000000