#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20754/NA20754.cram --algo AlignmentStat 1000G/NA20754/QCmetrics/NA20754.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	386714853	386714853	1.000000	0	386593571	0.999686	57440172107	364408634	54318377723	52973629128	0.000000	0.005131	0.004569	0.000219	150.000000	385424252	0.996975	0	0.500692	0.007422	0.000000	
SECOND_OF_PAIR	386714853	386714853	1.000000	0	385488177	0.996828	57006001175	360597940	53710330298	52406478545	0.000000	0.005124	0.004462	0.000227	150.000000	385424252	0.999834	0	0.500887	0.007688	0.000000	
PAIR	773429706	773429706	1.000000	0	772081748	0.998257	114446173282	725006574	108028708021	105380107673	0.000000	0.005128	0.004516	0.000223	150.000000	770848504	0.998403	0	0.500789	0.007555	0.000000