#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20762/NA20762.cram --algo AlignmentStat 1000G/NA20762/QCmetrics/NA20762.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	593908875	593908875	1.000000	0	593742136	0.999719	88179618023	558451230	83269688946	81842328262	0.000000	0.004214	0.003551	0.000227	150.000000	592268904	0.997519	0	0.500464	0.007144	0.000000	
SECOND_OF_PAIR	593908875	593908875	1.000000	0	592362902	0.997397	87575580869	553244351	82418948466	80814881069	0.000000	0.004625	0.003861	0.000234	150.000000	592268904	0.999841	0	0.501007	0.007338	0.000000	
PAIR	1187817750	1187817750	1.000000	0	1186105038	0.998558	175755198892	1111695581	165688637412	162657209331	0.000000	0.004419	0.003705	0.000231	150.000000	1184537808	0.998679	0	0.500735	0.007241	0.000000