#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20764/NA20764.cram --algo AlignmentStat 1000G/NA20764/QCmetrics/NA20764.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366954321	366954321	1.000000	0	366874819	0.999783	54548949874	346730338	51721593138	50973774869	0.000000	0.003645	0.003118	0.000224	150.000000	366195968	0.998150	0	0.500536	0.006288	0.000000	
SECOND_OF_PAIR	366954321	366954321	1.000000	0	366248885	0.998078	54133221887	344332938	51200177857	50180950933	0.000000	0.004691	0.004101	0.000233	150.000000	366195968	0.999856	0	0.500662	0.006986	0.000000	
PAIR	733908642	733908642	1.000000	0	733123704	0.998930	108682171761	691063276	102921770995	101154725802	0.000000	0.004166	0.003607	0.000229	150.000000	732391936	0.999002	0	0.500599	0.006637	0.000000