#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20767/NA20767.cram --algo AlignmentStat 1000G/NA20767/QCmetrics/NA20767.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	353707914	353707914	1.000000	0	353575591	0.999626	52442456508	331612958	49404328578	48535389207	0.000000	0.004537	0.003833	0.000227	150.000000	352773866	0.997733	0	0.500509	0.006818	0.000000	
SECOND_OF_PAIR	353707914	353707914	1.000000	0	352849406	0.997573	52165132014	329039702	49010717704	48102544211	0.000000	0.004635	0.003845	0.000232	150.000000	352773866	0.999786	0	0.500788	0.006977	0.000000	
PAIR	707415828	707415828	1.000000	0	706424997	0.998599	104607588522	660652660	98415046282	96637933418	0.000000	0.004586	0.003839	0.000230	150.000000	705547732	0.998758	0	0.500648	0.006897	0.000000