#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20801/NA20801.cram --algo AlignmentStat 1000G/NA20801/QCmetrics/NA20801.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380743912	380743912	1.000000	0	380648372	0.999749	56569842772	356192207	53157563066	52446239415	0.000000	0.003827	0.003107	0.000229	150.000000	379281421	0.996409	0	0.500615	0.007218	0.000000	
SECOND_OF_PAIR	380743912	380743912	1.000000	0	379324697	0.996273	55892757375	352412068	52356504441	51329405256	0.000000	0.004878	0.004064	0.000233	150.000000	379281421	0.999886	0	0.500854	0.007725	0.000000	
PAIR	761487824	761487824	1.000000	0	759973069	0.998011	112462600147	708604275	105514067507	103775644671	0.000000	0.004349	0.003582	0.000231	150.000000	758562842	0.998144	0	0.500735	0.007471	0.000000