#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20814/NA20814.cram --algo AlignmentStat 1000G/NA20814/QCmetrics/NA20814.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379623905	379623905	1.000000	0	379543065	0.999787	56408527390	356852900	53261218300	52579252838	0.000000	0.003719	0.003028	0.000233	150.000000	378403531	0.996998	0	0.500481	0.006350	0.000000	
SECOND_OF_PAIR	379623905	379623905	1.000000	0	378442299	0.996887	55828866184	353589001	52565304150	51645713362	0.000000	0.004527	0.003754	0.000236	150.000000	378403531	0.999898	0	0.500711	0.006769	0.000000	
PAIR	759247810	759247810	1.000000	0	757985364	0.998337	112237393574	710441901	105826522450	104224966200	0.000000	0.004121	0.003389	0.000234	150.000000	756807062	0.998445	0	0.500596	0.006559	0.000000