#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20821/NA20821.cram --algo AlignmentStat 1000G/NA20821/QCmetrics/NA20821.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	373915166	373915166	1.000000	0	373843725	0.999809	55626777361	353787043	52810399523	52039302023	0.000000	0.003503	0.002989	0.000229	150.000000	372743405	0.997057	0	0.500514	0.007045	0.000000	
SECOND_OF_PAIR	373915166	373915166	1.000000	0	372783564	0.996974	55138472069	350606361	52191034805	51229367992	0.000000	0.004117	0.003516	0.000234	150.000000	372743405	0.999892	0	0.501056	0.007370	0.000000	
PAIR	747830332	747830332	1.000000	0	746627289	0.998391	110765249430	704393404	105001434328	103268670015	0.000000	0.003809	0.003251	0.000231	150.000000	745486810	0.998472	0	0.500785	0.007207	0.000000