#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20864/NA20864.cram --algo AlignmentStat 1000G/NA20864/QCmetrics/NA20864.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	400892443	400892443	1.000000	0	400814028	0.999804	59641677227	376490999	56209513419	55469724484	0.000000	0.003689	0.003063	0.000228	150.000000	399674491	0.997157	0	0.500560	0.006292	0.000000	
SECOND_OF_PAIR	400892443	400892443	1.000000	0	399712845	0.997058	59041224928	372971094	55485725551	54592210857	0.000000	0.004254	0.003550	0.000232	150.000000	399674491	0.999904	0	0.500317	0.006672	0.000000	
PAIR	801784886	801784886	1.000000	0	800526873	0.998431	118682902155	749462093	111695238970	110061935341	0.000000	0.003970	0.003305	0.000230	150.000000	799348982	0.998529	0	0.500439	0.006481	0.000000