#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20867/NA20867.cram --algo AlignmentStat 1000G/NA20867/QCmetrics/NA20867.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375870668	375870668	1.000000	0	375792348	0.999792	55854355722	351924783	52510093285	51706876726	0.000000	0.003838	0.003138	0.000236	150.000000	374866513	0.997536	0	0.500640	0.006835	0.000000	
SECOND_OF_PAIR	375870668	375870668	1.000000	0	374908649	0.997441	55443573629	348723036	51959720439	50909536062	0.000000	0.004574	0.003778	0.000240	150.000000	374866513	0.999888	0	0.500901	0.006979	0.000000	
PAIR	751741336	751741336	1.000000	0	750700997	0.998616	111297929351	700647819	104469813724	102616412788	0.000000	0.004205	0.003457	0.000238	150.000000	749733026	0.998711	0	0.500770	0.006907	0.000000