#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20868/NA20868.cram --algo AlignmentStat 1000G/NA20868/QCmetrics/NA20868.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	405607287	405607287	1.000000	0	405527758	0.999804	60343037800	383029463	57176060916	56383977937	0.000000	0.003521	0.002983	0.000234	150.000000	404293236	0.996956	0	0.500614	0.006646	0.000000	
SECOND_OF_PAIR	405607287	405607287	1.000000	0	404337148	0.996869	59781221847	379166162	56443381442	55490607820	0.000000	0.004055	0.003419	0.000240	150.000000	404293236	0.999891	0	0.501133	0.006967	0.000000	
PAIR	811214574	811214574	1.000000	0	809864906	0.998336	120124259647	762195625	113619442358	111874585757	0.000000	0.003787	0.003200	0.000237	150.000000	808586472	0.998421	0	0.500873	0.006807	0.000000