#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20885/NA20885.cram --algo AlignmentStat 1000G/NA20885/QCmetrics/NA20885.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	341043203	341043203	1.000000	0	340951028	0.999730	50701191562	321295639	47938578233	47147786156	0.000000	0.004088	0.003466	0.000234	150.000000	339951643	0.997069	0	0.500419	0.006556	0.000000	
SECOND_OF_PAIR	341043203	341043203	1.000000	0	339999154	0.996939	50279789060	318405270	47400816551	46517968874	0.000000	0.004463	0.003761	0.000239	150.000000	339951643	0.999860	0	0.500876	0.006793	0.000000	
PAIR	682086406	682086406	1.000000	0	680950182	0.998334	100980980622	639700909	95339394784	93665755030	0.000000	0.004275	0.003612	0.000237	150.000000	679903286	0.998463	0	0.500647	0.006674	0.000000