#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20889/NA20889.cram --algo AlignmentStat 1000G/NA20889/QCmetrics/NA20889.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	373585642	373585642	1.000000	0	373517441	0.999817	55574400444	351264683	52433274730	51705465844	0.000000	0.003632	0.003013	0.000233	150.000000	372592378	0.997523	0	0.500508	0.006735	0.000000	
SECOND_OF_PAIR	373585642	373585642	1.000000	0	372632070	0.997448	55166285014	348862994	51939053133	51019023640	0.000000	0.004231	0.003548	0.000236	150.000000	372592378	0.999893	0	0.500564	0.007052	0.000000	
PAIR	747171284	747171284	1.000000	0	746149511	0.998632	110740685458	700127677	104372327863	102724489484	0.000000	0.003930	0.003279	0.000234	150.000000	745184756	0.998707	0	0.500536	0.006893	0.000000