#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA20894/NA20894.cram --algo AlignmentStat 1000G/NA20894/QCmetrics/NA20894.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356680442	356680442	1.000000	0	356603219	0.999783	53014941955	335944533	50117566541	49409389900	0.000000	0.003626	0.003046	0.000230	150.000000	355780389	0.997693	0	0.500540	0.005719	0.000000	
SECOND_OF_PAIR	356680442	356680442	1.000000	0	355830441	0.997617	52544400797	333153914	49521711753	48420084176	0.000000	0.005039	0.004378	0.000239	150.000000	355780389	0.999859	0	0.501127	0.006382	0.000000	
PAIR	713360884	713360884	1.000000	0	712433660	0.998700	105559342752	669098447	99639278294	97829474076	0.000000	0.004329	0.003708	0.000234	150.000000	711560778	0.998775	0	0.500833	0.006050	0.000000