#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA21087/NA21087.cram --algo AlignmentStat 1000G/NA21087/QCmetrics/NA21087.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385197467	385197467	1.000000	0	385091103	0.999724	57193628915	361231353	53858294151	52981431274	0.000000	0.004062	0.003423	0.000235	150.000000	384073482	0.997357	0	0.500505	0.006159	0.000000	
SECOND_OF_PAIR	385197467	385197467	1.000000	0	384137203	0.997247	56835163527	357705866	53321746692	52370930469	0.000000	0.004422	0.003681	0.000242	150.000000	384073482	0.999834	0	0.501349	0.006217	0.000000	
PAIR	770394934	770394934	1.000000	0	769228306	0.998486	114028792442	718937219	107180040843	105352361743	0.000000	0.004241	0.003551	0.000238	150.000000	768146964	0.998594	0	0.500926	0.006188	0.000000