#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA21091/NA21091.cram --algo AlignmentStat 1000G/NA21091/QCmetrics/NA21091.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379485070	379485070	1.000000	0	379388259	0.999745	56356154756	356803161	53184207451	52321918807	0.000000	0.004084	0.003470	0.000227	150.000000	378472065	0.997585	0	0.500450	0.006463	0.000000	
SECOND_OF_PAIR	379485070	379485070	1.000000	0	378536825	0.997501	56062275193	353754916	52736354280	51825584664	0.000000	0.004334	0.003632	0.000234	150.000000	378472065	0.999829	0	0.501220	0.006544	0.000000	
PAIR	758970140	758970140	1.000000	0	757925084	0.998623	112418429949	710558077	105920561731	104147503471	0.000000	0.004209	0.003551	0.000230	150.000000	756944130	0.998706	0	0.500835	0.006503	0.000000