#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA21092/NA21092.cram --algo AlignmentStat 1000G/NA21092/QCmetrics/NA21092.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	349799875	349799875	1.000000	0	349691015	0.999689	51914642813	328238720	48922317623	48097231553	0.000000	0.004142	0.003463	0.000232	150.000000	348825102	0.997524	0	0.500499	0.006600	0.000000	
SECOND_OF_PAIR	349799875	349799875	1.000000	0	348886986	0.997390	51639576446	325524982	48508335348	47551975093	0.000000	0.004664	0.003896	0.000237	150.000000	348825102	0.999823	0	0.501166	0.006688	0.000000	
PAIR	699599750	699599750	1.000000	0	698578001	0.998540	103554219259	653763702	97430652971	95649206646	0.000000	0.004403	0.003679	0.000235	150.000000	697650204	0.998672	0	0.500832	0.006644	0.000000