#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA21095/NA21095.cram --algo AlignmentStat 1000G/NA21095/QCmetrics/NA21095.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	328771294	328771294	1.000000	0	328653758	0.999642	48718774857	307296513	45774797867	44877723338	0.000000	0.004618	0.003881	0.000236	150.000000	327724330	0.997172	0	0.500664	0.006505	0.000000	
SECOND_OF_PAIR	328771294	328771294	1.000000	0	327790821	0.997018	48407070559	304748686	45358694296	44213229764	0.000000	0.005411	0.004585	0.000241	150.000000	327724330	0.999797	0	0.500836	0.006582	0.000000	
PAIR	657542588	657542588	1.000000	0	656444579	0.998330	97125845416	612045199	91133492163	89090953102	0.000000	0.005013	0.004231	0.000238	150.000000	655448660	0.998483	0	0.500750	0.006543	0.000000