#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA21122/NA21122.cram --algo AlignmentStat 1000G/NA21122/QCmetrics/NA21122.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366977199	366977199	1.000000	0	366887899	0.999757	54506839076	345262402	51475785311	50634062323	0.000000	0.003950	0.003413	0.000227	150.000000	366000397	0.997581	0	0.500497	0.005535	0.000000	
SECOND_OF_PAIR	366977199	366977199	1.000000	0	366060391	0.997502	54209783006	342182439	51013860699	50110211935	0.000000	0.004262	0.003630	0.000233	150.000000	366000397	0.999836	0	0.501281	0.005568	0.000000	
PAIR	733954398	733954398	1.000000	0	732948290	0.998629	108716622082	687444841	102489646010	100744274258	0.000000	0.004106	0.003521	0.000230	150.000000	732000794	0.998707	0	0.500888	0.005552	0.000000