#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA21141/NA21141.cram --algo AlignmentStat 1000G/NA21141/QCmetrics/NA21141.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398930070	398930070	1.000000	0	398767247	0.999592	59208681856	375485701	55959804111	54547590658	0.000000	0.005165	0.004604	0.000220	150.000000	397601359	0.997076	0	0.500604	0.005861	0.000000	
SECOND_OF_PAIR	398930070	398930070	1.000000	0	397680505	0.996868	58806715658	372122967	55411739543	53973458348	0.000000	0.005344	0.004693	0.000227	150.000000	397601359	0.999801	0	0.500966	0.005999	0.000000	
PAIR	797860140	797860140	1.000000	0	796447752	0.998230	118015397514	747608668	111371543654	108521049006	0.000000	0.005254	0.004648	0.000223	150.000000	795202718	0.998437	0	0.500785	0.005930	0.000000