#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/NA21143/NA21143.cram --algo AlignmentStat 1000G/NA21143/QCmetrics/NA21143.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	436144732	436144732	1.000000	0	436021632	0.999718	64735060575	411190288	61307662406	60222494266	0.000000	0.004113	0.003534	0.000227	150.000000	435042620	0.997755	0	0.500471	0.006477	0.000000	
SECOND_OF_PAIR	436144732	436144732	1.000000	0	435113447	0.997635	64362991346	408051288	60787513248	59550423402	0.000000	0.004568	0.003904	0.000231	150.000000	435042620	0.999837	0	0.500954	0.006657	0.000000	
PAIR	872289464	872289464	1.000000	0	871135079	0.998677	129098051921	819241576	122095175654	119772917668	0.000000	0.004340	0.003718	0.000229	150.000000	870085240	0.998795	0	0.500712	0.006567	0.000000