#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00007/HGDP00007.cram --algo AlignmentStat HGDP/HGDP00007/QCmetrics/HGDP00007.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	478115363	478115363	1.000000	0	477305620	0.998306	71237796450	446489478	66981666716	65263523683	0.000000	0.005167	0.004395	0.000225	151.000000	475722981	0.996684	0	0.499970	0.020943	0.000005	
SECOND_OF_PAIR	478115363	478115363	1.000000	0	475774799	0.995105	69695874554	444012227	65639207207	61436576515	0.000000	0.010668	0.009878	0.000215	151.000000	475722981	0.999891	0	0.499541	0.023098	0.001421	
PAIR	956230726	956230726	1.000000	0	953080419	0.996705	140933671004	890501705	132620873923	126700100198	0.000000	0.007887	0.007109	0.000220	151.000000	951445962	0.998285	0	0.499756	0.022019	0.000713