#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00021/HGDP00021.cram --algo AlignmentStat HGDP/HGDP00021/QCmetrics/HGDP00021.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	309246154	309246154	1.000000	0	309020148	0.999269	46110020979	288573839	43299773901	42162784610	0.000000	0.005310	0.004542	0.000219	151.000000	308068025	0.996919	0	0.499847	0.019990	0.000002	
SECOND_OF_PAIR	309246154	309246154	1.000000	0	308092939	0.996271	45200556067	287104834	42532402444	40055149346	0.000000	0.009758	0.008970	0.000210	151.000000	308068025	0.999919	0	0.499693	0.021691	0.000450	
PAIR	618492308	618492308	1.000000	0	617113087	0.997770	91310577046	575678673	85832176345	82217933956	0.000000	0.007512	0.006736	0.000214	151.000000	616136050	0.998417	0	0.499770	0.020839	0.000226