#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00049/HGDP00049.cram --algo AlignmentStat HGDP/HGDP00049/QCmetrics/HGDP00049.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	486327152	486327152	1.000000	0	486019198	0.999367	72611772706	454659575	68242179318	66492494311	0.000000	0.005085	0.004374	0.000220	151.000000	484601086	0.997082	0	0.499970	0.020189	0.000002	
SECOND_OF_PAIR	486327152	486327152	1.000000	0	484635340	0.996521	71123010475	452403363	66966521585	62698994526	0.000000	0.010221	0.009480	0.000211	151.000000	484601086	0.999929	0	0.499643	0.021854	0.000425	
PAIR	972654304	972654304	1.000000	0	970654538	0.997944	143734783181	907062938	135208700903	129191488837	0.000000	0.007626	0.006903	0.000216	151.000000	969202172	0.998504	0	0.499807	0.021020	0.000214