#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00103/HGDP00103.cram --algo AlignmentStat HGDP/HGDP00103/QCmetrics/HGDP00103.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368013670	368013670	1.000000	0	367488112	0.998572	54742648512	342783943	51266467391	49101969077	0.000000	0.005712	0.005063	0.000208	151.000000	364117797	0.990829	0	0.496375	0.022788	0.000071	
SECOND_OF_PAIR	368013670	368013670	1.000000	0	364137389	0.989467	53909343561	339528038	50494626409	46836127096	0.000000	0.008818	0.008180	0.000202	151.000000	364117797	0.999946	0	0.496651	0.023597	0.000067	
PAIR	736027340	736027340	1.000000	0	731625501	0.994019	108651992073	682311981	101761093800	95938096173	0.000000	0.007253	0.006610	0.000205	151.000000	728235594	0.995367	0	0.496512	0.023191	0.000069