#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00121/HGDP00121.cram --algo AlignmentStat HGDP/HGDP00121/QCmetrics/HGDP00121.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	413185930	413185930	1.000000	0	412890926	0.999286	61715204001	386111011	57966957540	56540230696	0.000000	0.005005	0.004295	0.000217	151.000000	410861775	0.995086	0	0.500025	0.020357	0.000002	
SECOND_OF_PAIR	413185930	413185930	1.000000	0	410892536	0.994449	60246607106	383239257	56686370554	53021355289	0.000000	0.010823	0.010072	0.000210	151.000000	410861775	0.999925	0	0.499412	0.021753	0.000512	
PAIR	826371860	826371860	1.000000	0	823783462	0.996868	121961811107	769350268	114653328094	109561585985	0.000000	0.007879	0.007151	0.000214	151.000000	821723550	0.997499	0	0.499719	0.021053	0.000257