#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00129/HGDP00129.cram --algo AlignmentStat HGDP/HGDP00129/QCmetrics/HGDP00129.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	438208459	438208459	1.000000	0	437987661	0.999496	65522092693	409899290	61566314529	60256645534	0.000000	0.004703	0.004028	0.000217	151.000000	435978581	0.995413	0	0.499979	0.018917	0.000001	
SECOND_OF_PAIR	438208459	438208459	1.000000	0	436007594	0.994978	64075718067	407095268	60297652807	56701362561	0.000000	0.010258	0.009533	0.000210	151.000000	435978581	0.999933	0	0.499486	0.020095	0.000324	
PAIR	876416918	876416918	1.000000	0	873995255	0.997237	129597810760	816994558	121863967336	116958008095	0.000000	0.007449	0.006751	0.000214	151.000000	871957162	0.997668	0	0.499733	0.019505	0.000163