#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00136/HGDP00136.cram --algo AlignmentStat HGDP/HGDP00136/QCmetrics/HGDP00136.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	321816575	321816575	1.000000	0	321735784	0.999749	48159632225	301688386	45298519189	43476474407	0.000000	0.005030	0.004379	0.000208	151.000000	321482276	0.999212	0	0.499309	0.017799	0.000087	
SECOND_OF_PAIR	321816575	321816575	1.000000	0	321498920	0.999013	47906482502	301140808	45046348379	42413874209	0.000000	0.007312	0.006663	0.000204	151.000000	321482276	0.999948	0	0.499299	0.018442	0.000083	
PAIR	643633150	643633150	1.000000	0	643234704	0.999381	96066114727	602829194	90344867568	85890348616	0.000000	0.006168	0.005517	0.000206	151.000000	642964552	0.999580	0	0.499304	0.018121	0.000085