#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00145/HGDP00145.cram --algo AlignmentStat HGDP/HGDP00145/QCmetrics/HGDP00145.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	397507386	397507386	1.000000	0	396608056	0.997738	59175500913	369752796	55494126230	54040852873	0.000000	0.005458	0.004675	0.000223	151.000000	393374208	0.991846	0	0.499829	0.021958	0.000008	
SECOND_OF_PAIR	397507386	397507386	1.000000	0	393409004	0.989690	56954127533	365445494	53513020614	48622801330	1.000000	0.014529	0.013787	0.000209	151.000000	393374208	0.999912	0	0.499573	0.023468	0.001984	
PAIR	795014772	795014772	1.000000	0	790017060	0.993714	116129628446	735198290	109007146844	102663654203	0.000000	0.009906	0.009148	0.000216	151.000000	786748416	0.995863	0	0.499702	0.022710	0.000996