#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00148/HGDP00148.cram --algo AlignmentStat HGDP/HGDP00148/QCmetrics/HGDP00148.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	402436162	402436162	1.000000	0	401194791	0.996915	59817122664	374562628	56150586931	54562705717	0.000000	0.005656	0.004904	0.000223	151.000000	399237510	0.995121	0	0.499906	0.019894	0.000009	
SECOND_OF_PAIR	402436162	402436162	1.000000	0	399285946	0.992172	58103116588	371726455	54657566724	50131484821	1.000000	0.013198	0.012466	0.000209	151.000000	399237510	0.999879	0	0.499573	0.021229	0.002701	
PAIR	804872324	804872324	1.000000	0	800480737	0.994544	117920239252	746289083	110808153655	104694190538	0.000000	0.009372	0.008633	0.000216	151.000000	798475020	0.997494	0	0.499740	0.020560	0.001355