#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00149/HGDP00149.cram --algo AlignmentStat HGDP/HGDP00149/QCmetrics/HGDP00149.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	395167176	395167176	1.000000	0	394229889	0.997628	58790397409	368005155	55185364167	53689079365	0.000000	0.005462	0.004682	0.000226	151.000000	392734774	0.996208	0	0.499924	0.020888	0.000006	
SECOND_OF_PAIR	395167176	395167176	1.000000	0	392773676	0.993943	57278031572	365691488	53876427254	49843456113	0.000000	0.011919	0.011141	0.000214	151.000000	392734774	0.999901	0	0.499560	0.022394	0.002051	
PAIR	790334352	790334352	1.000000	0	787003565	0.995786	116068428981	733696643	109061791421	103532535478	0.000000	0.008648	0.007872	0.000220	151.000000	785469548	0.998051	0	0.499743	0.021640	0.001029