#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00151/HGDP00151.cram --algo AlignmentStat HGDP/HGDP00151/QCmetrics/HGDP00151.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	405566565	405566565	1.000000	0	405258271	0.999240	60496961852	380247001	57112174075	55757228391	0.000000	0.005035	0.004293	0.000227	151.000000	403003619	0.994437	0	0.499982	0.021511	0.000002	
SECOND_OF_PAIR	405566565	405566565	1.000000	0	403032096	0.993751	58659783103	376995270	55487389237	50798877736	1.000000	0.013572	0.012887	0.000212	151.000000	403003619	0.999929	0	0.499510	0.022921	0.000491	
PAIR	811133130	811133130	1.000000	0	808290367	0.996495	119156744955	757242271	112599563312	106556106127	0.000000	0.009237	0.008528	0.000220	151.000000	806007238	0.997175	0	0.499747	0.022214	0.000246