#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP00154/HGDP00154.cram --algo AlignmentStat HGDP/HGDP00154/QCmetrics/HGDP00154.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	417656076	417656076	1.000000	0	417185554	0.998873	62317256796	392052691	58860288181	57453369985	0.000000	0.005162	0.004505	0.000218	151.000000	415143250	0.995105	0	0.499941	0.019732	0.000003	
SECOND_OF_PAIR	417656076	417656076	1.000000	0	415173249	0.994055	60431676060	388984631	57193510338	52398555392	1.000000	0.013603	0.012968	0.000205	151.000000	415143250	0.999928	0	0.499533	0.021369	0.000855	
PAIR	835312152	835312152	1.000000	0	832358803	0.996464	122748932856	781037322	116053798519	109851925377	0.000000	0.009318	0.008676	0.000211	151.000000	830286500	0.997510	0	0.499737	0.020549	0.000429